BIOINFORMATIC WEBSITE LINKS
By S.Sivakumar

  1. NCBI - National Centre for Biotechnology Information - ( www.ncbi.nlm.nih.gov/Genbank   )
  2. TIGR Database - ( www.tigr.org/tdb/mdb/mdbcomplete.html  )
  3. BLAST - ( www.ncbi.nlm.gov/BLAST/ )
  4. FASTA Program - ( www.ebi.ac.uk/fasta33/ )
  5. Pubmed - ( www.ncbi.nlm.gov/PubMed/ )
  6. Text Searches - ( http://chaos.swmed.edu/etblast/index.html  )
  7. Linkage Tools - ( http://linkage.rockefeller.edu )
  8. Phylip - ( http://evolution.genetocs.washington.edu/phylip.html )
  9. Tree of Life - ( http://tolweb.org/tree/phylogeny.html
  10. Array Express - ( http://www.ebi.ac.uk/arrayexpress/ )
  11. Shotgun sequencing - ( www.phrap.org )
  12. Single Nucleotide Substitution - ( http://droog.mht.washington.edu/PolyPhred.html )
  13. Genome Annotation - ( http://compbio.ornl.gov/gac/ )
  14. Genie - Locate Genes - ( www.fruitfly.org/seq_tools/genie.html )
  15. Software List - ( www.softberry.com )
  16. Genetic Variation - ( www.genome.gov )
  17. Virtual Cell - ( www.nrcam.uchc.edu )
  18. SWISS-PROT - ( http://us.expasy.org )
  19. PIR - ( http://pir.georgetown.edu )
  20. OWL Database - ( www.hgmp.mrc.ac.uk/Bioinformatics/Databases/owl-help.html )
  21. PROSITE - ( www.expasy.ch/prosite )
  22. Protein Family Database (Pfam) - ( www.sanger.ac.uk/software/pfam )
  23. Protein Data Bank - ( www.pdb.org )
  24. PDBSum - ( http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/  )
  25. CATH - ( www.biochem.ucl.ac.uk/bsm/cath/ )
  26. SCOP - ( http://scop.mrc-lmb.cam.ac.uk/scop/ )
  27. EMBL - ( www.ebi.ac.uk/embl )
  28. UniGene - ( www.ncbi.nlm.nih.gov/UniGene/ )
  29. Sacchromyces Genome Database (SGD)  -  ( genome-www.standford.edu/Sacchromyces/ )
  30. Genome Databases - ( www.ebi.ac.uk/genomes/ )
  31. Eukaryotic Genome Annotations - Ensembl - ( www.ensembl.org )
  32. Genome Analysis - ( http://bioinfo.mbby.yale.edu/genome )
  33. Cluster of Orthologous Group Databases - ( www.ncbi.nlm.nih.gov/COG )
  34. Tumor Expression Data base - ( http://llmpp.nih.gov/lymphoma/ )
  35. Human Gene Data base - GeneCards - ( http://bioinformatics.weizmann.ac.il/cards/ )
  36. KEGG - Kyoto Encyclopedia of Genes and Genomes - ( www.genome.ad.jp/kegg/ )
  37. Protein Sequencing - SAPS - ( http://www.isrec.isb-sib.ch/software/SAPS_form.html )
  38. DotPlot - ( www.accelrys.com/gcg )
  39. Codon Usage analysis - ( www.hgmp.mrc.ac.uk/Registered/Option/codonw.html )
  40. ProteinProspector - ( http://prospector.ucsf.edu/  )
  41. Signal Scan - Pattern searches - ( http://bimas.dcrt.nih.gov/molbio/signal/ )
  42. Search engine - Biological, Agricultural and Medical Sciences - ( http://infomine.ucr.edu/cgi-bin/search?bioag )
  43. Search engine - Biolinks - ( www.biolinks.com )
  44. Searcg engine list - ( www.searchengineguide.com )
  45. Database retrieval system - DBGET - ( www.genome.ad.jp/dbget )
  46. Biology workbench - ( http://workbench.sdsc.edu/ )
  47. BioRs - Biological data retrieval system - ( http://mips.gsf.de/projects/biors )
  48. Motif search - Meme/ Mast system - ( http://meme.sdsc.edu/meme/website/intro.html  )
  49. MORGAN - Gene Finding - ( www.tigr.org/~salzberg/morgan.html )
  50. Secondary structure Prediction - nnPredict - ( http://www.cmpharm.ucsf.edu/~nomi/nnpredict-instrucs.html )
  51. GeneFinder - ( http://pir.georgetown.edu/gfserver/genefind.html/ )
  52. Genome Databases - GOLD - ( http://wit.integratedgenomics.com/GOLD/ )
  53. Completed Genomes - ( www.ebi.ac.uk/genomes/ )
  54. Genomic Biology - ( http://www.ncbi.nlm.nih.gov/Genomes/ )
  55. Pathogenic and Model Organisms genomes - ( www.sanger.ac.uk/Projects/Microbes/ )
  56. Human Genome - ( www.genome.gov )
  57. Human Genome Project - ( www.ornl.gov/TechResources/Human_Genome/ )
  58. RESTRICTION MAPS - RFLP - ( http://pgrc.ipk-gastersleben.de/rflp/rflp.html )
  59. STS - ( www.ncbi.nlm.nih.gov/dbSTS/ )
  60. EST - ( www.ncbi.nlm.nih.gov/dbEST )
  61. RH MAPPER - ( www.hgmp.mrc.ac.uk/Registered/Option/rhmapper.html )
  62. SEQUENCE ASSEMBLY TOOLS - Genome Sequencing - ( www.geospiza.com/products/tools/index.htm)
  63. Phrap - overlapping identified - ( www.geospiza.com/products/tools/phrap.htm  )
  64. Phred - ( www.geospiza.com/products/tools/phred.htm )
  65. overlapping - Assembler 2.0 - ( www.tigr.org/software/assembler/ )
  66. CAP3 - ( http://deepc2.zool.iastate.edu/aat/cap/cap.html )
  67. Sequencer - Sequencing - ( www.genecodes.com )
  68. Accelrys softwares - ( www.accelrys.com/products/gcg_wisconsin_package/ )
  69. EMBOSS Programms - ( www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/ )
  70. Genematcher2 - Gap opening and penalty analysis - ( www.paracel.com/products/gm2.html )
  71. Local Alignment - Blitz - ( www.ebi.ac.uk/searches/blitz_input.html )
  72. Local Alignment - SSearch - ( www.accelrys.com/products/seqweb/program_list.html )
  73. Multiple Sequence Alignment - ClustalW - ( www.ebi.ac.uk/clustalw/ )
  74. MSA Program - ( www.psc.edu/general/software/packages/msa )
  75. Pileup - ( www.accelrys.com/products/gcg_wisconsin_package/program_list.html#PileUp )
  76. Pattern Induced Multiple Alignment (PIMA) - ( http://bioweb.pasteur.fr/seqanal/inter-faces/pima-simple.html )
  77. Multalign - ( http://cbrg.inf.ethz.ch/Server/MultAlign.html )
  78. Dialign - ( www.gsf.de/biodv/dialign.html )
  79. Serial Alignment by Genetic Algorithms (SAGA) - ( http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/saga_home_page.html )
  80. Parallel Prrn - ( http://prrn.ims.u-tokyo.ac.jp/ )
  81. Hmmt - ( www.psc.edu/general/software/packages/hmmer/manual/hmmt.html )
  82. BlockMaker - ( www.blocks.fhcrc.org/blockmkr/make_blocks.html )
  83. PHYLOGENETICS - MP - PHYLIP DNAPARS - ( http://bioweb.pasteur.fr/cgi-bin/seqanal/dnapars.pl )
  84. ML - FastDNAml - ( http://bioweb.pasteur.fr/seqanal/interfaces/fastdnaml-simple.html )
  85. PhyloBLAST - ( www.pathogenomics.bc.ca/phyloBLAST/ )
  86. PHYLIP - Phylogeny Inference Package - ( http://evolution.genetics.washington.edu/phylip.html )
  87. Phylogenetic Analysis Using Parsimony (PAUP) - ( http://paup.csit.fsu.edu )
  88. Phylogenetic Analysis by Maximum Likelihood - PAML - ( http://abacus.gene.ucl.ac.uk/software/paml.html )
  89. Phylogenetic tree viewer - Tree View - ( http://taxonomy.zoology.gla.ac.uk/rod/treeview.html )
  90. NJplot - ( http://pbil.univ-lyon1.fr/software/njplot.html )
  91. Single Nucleotide Polymorphisms searches - ( www.ebi.ac.uk/snpfasta3/index.html )
  92. Prss Program - ( http://fasta.bioch.virginia.edu/fasta/prss.html )
  93. FASTA - ( http://alpha10.bioch.virginia.edu/fasta/ )
  94. SWAT - ( http://www.genome.washington.edu/UWGC/analysistools/Swat.cfm )
  95. BCM search Launcher - ( http://searchlauncher.bcm.tmc.edu )
  96. Sequence Alignment and Modeling system - SAM - ( www.cse.ucsc.edu/research/compbio/sam.html )
  97. meta-MEME - ( http://metameme.sdsc.edu/ )
  98. Gene Prediction - GeneMark - ( www.ebi.ac.uk/genemark/ )
  99. Genefinding - GRAIL - ( http://compbio.ornl.gov/Grail-1.3/ )
  100. FindPatterns - ( www.accelrys.com/products/gcg_wisconsin_package/program_list.html#Findpatterns )
  101. Frames -  ( www.accelrys.com/products/gcg_wisconsin_package/ )
  102. Mac Vector 6.5 - ( http://www.sxst.it/oxm_mcv.htm )
  103. Sequencher - ( http://www.genecodes.com/index.html )
  104. Testcode - ( http://www.accelrys.com/products/gcg_wisconsin_package/ )
  105. Procrustes - ( http://hto-13.usc.edu/software/procrustes/ )
  106. HMMgene - Prediction in anonymous DNA - ( www.cbs.dtu.dk/services/HMMgene/ )
  107. Glimmer - ( www.tigr.org/software/glimmer/ )
  108. Veil System - ( www.tigr.org/~salzberg/veil.html )
  109. GENSCAN - ( http://genes.mit.edu/GENSCAN.html )
  110. Genie - ( http://www.fruitfly.org/seq_tools/genie.html )
  111. SIGNAL SCAN - ( www.cbs.umn.edu/software/sigscan.html )
  112. GenLang - ( www.cbil.upenn.edu/genlang/genlang_home.html )
  113. GeneParser - ( http://beagle.colorado.edu/~eesnyder/GeneParser.html )
  114. GeneID - ( www1.imim.es/software/geneid/asd.html )
  115. PolyA Site Prediction - ( http://125.itba.mi.cnr.it/~webgene/wwwHC_polya.html )
  116. HCtata - ( http://125.itba.mi.cnr.it/~webgene/wwwHC_tata.html  )
  117. MatInspector - ( www.genomatrix.de/cgi-bin/matinspector/matinspector.pl )
  118. Signal sequence search - ( http://bimas.dcrt.nih.gov/molbio/signal/ )
  119. Tfsitescan - ( www.ifti.org/cgi-bin/ifti/Tfsitescan.pl )
  120. FramePlot - ( http://watson.nih.go.jp/~jun/cgi-bin/frameplot-3.0b.pl )
  121. ORF Finder - ( www.ncbi.nlm.nih.gov/gorf/gorf.html )
  122. Exon Prediction Program - Perceval - ( http://compbio.ornl.gov/grailexp/gxpfaq2.html )
  123. Repetitive Elements Identification - RepeatMasker - ( http://ftp.genome.washington.edu/cgi-bin/RepeatMasker )
  124. tRNA gene Prediction - ( www.genetics.wustl.edu/eddy/tRNAscan-SE/ )
  125. Microarray - Image processing tool - ( www.scanalytics.com/product/microarray/index.html )
  126. Image processing tool - Genepix - ( www.axon.com/GN_GenePixSoftware.html )
  127. NetAffx - ( www.affymetrix.com/analysis/index.affx )
  128. Xcluster - ( www.cbil.upenn.edu/epcondb/servlet/sv?page=xcluster )
  129. GEPAS - ( http://gepas.bioinfo.cnio.es/tools.html )
  130. Serial Analysis of Gene Expression (SAGE) - ( www.sagenet.org )
  131. SAGE (NCBI) - ( www.ncbi.nlm.nih.gov/SAGE/ )
  132. PRIMARY STRUCTURE ANALYSIS - PROWL - ( http://prowl.rockefeller.edu/aainfo/contents.htm )
  133. PROCHECK - ( www.biochem.ucl.ac.uk/~roman/procheck/procheck.html )
  134. Calcium Binding Protein Library - ( http://structbio.vanderbilt.edu/cabp_database/cabp.html )
  135. Molecular Modeling Database (MMDB) - ( www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml )
  136. VIEWERS - Cn3D - ( www.ncbi.nlm.nih.gov/Structure/CN3-D/cn3-D.shtml )
  137. Rasmol - ( www.umass.edu/micobio/rasmol/ )
  138. SWISS-PDB Viewer - ( http://us.expasy.org/spdbv/ )
  139. Kinemages - ( http://kinemage.biochem.duke.edu/kinemage/kinemage.php )
  140. STRUCTURE ALIGNMENT - VAST - ( www.ncbi.nlm.nih.gov/Structure/VAST/vastsearch.html )
  141. DALI - ( www2.ebi.ac.uk/dali/ )
  142. Conserved Domain Database (CDD) - ( www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml )
  143. SMART -  Simple Modular Architecture Research Tool ) - ( http://smart.embl-heidelberg.de/ )
  144. Conserved Domain Archietecture Retrrieval Tool ( CDART) - ( www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps )
  145. Ligplot - ( www.biochem.ucl.ac.uk/bsm/ligplot/ligplot.html )
  146. EXPASY TOOLS - ( www.expasy.org )
  147. PROTEIN IDENTIFICATION - AACompIdent - ( http://us.expasy.org/tools/aacomp/ )
  148. TagIdent - (  http://us.expasy.org/tools/tagident.html  )
  149. PeptIdent - ( http://us.expasy.org/tools/pepident.html  )
  150. MultiIdent - ( http://us.expasy.org/tools/multiident/  )
  151. AAcompsim - ( http://us.expasy.org/tools/aacsim  )
  152. FindPept - ( http://ca.expasy.org/tools/findpept.html  )
  153. PROPSEARCH - ( www.infobiosud.univmontp1.fr/SERVEUR/PROPSEARCHpropsearch.html )
  154. Pepsea - http://195.41.108.38/PepSeaIntro.html )
  155. PepMAPPER - ( http://wolf.bms.umist.ac.uk/mapper/ )
  156. Mascot search - ( www.matrixscience.com/cgi/index.pl?page=/search_form_select.html )
  157. Peptide Search - ( www.mann.embl-heidelberg.de/GroupPages/PageLink/peptidesearchpage.html )
  158. Transmembrane region Prediction  - TMAP - ( www.mbb.ki.se/tmap/ )
  159. TMHMM - ( www.cbs.dtu.dk/services/TMHMM/ )
  160. TMPRED - ( www.ch.embnet.org/software/TMPRED_form.html )
  161. TopPred2 - ( http://bioweb.pasteur.fr/seqanal/interfaces/toppred.html )
  162. PHDhtm - ( http://www.embl-heidelberg.de/predictprotein/Dtab/phd_htm.html )
  163. DAS - ( www.sbc.su.se/~miklos/DAS/ )
  164. ComputePI/Mw - ( http://ca.expasy.org/tools/pi_tool.html )
  165. PeptideMass - ( www.expasy.org/tools/peptide-mass.html )
  166. SAPS - ( www.isrec.isb-sib.ch/software/SAPS_form.html )
  167. Protparam - ( http://ca.expasy.org/tools/protparam.html )
  168. Protscale - ( http://ca.expasy.org/cgi-bin/protscale.pl )
  169. PHD - ( www.embl-heidelberg.de/predictprotein/ )
  170. PEST - ( www.icnet.uk/LRITu/projects/pest/ )
  171. PESTfind - ( http://embl1.bcc.univie.ac.at/embnet/tools/bio/PESTfind/ )
  172. Coils - ( www.ch.embnet.org/software/COILS_form.html )
  173. Paircoil - ( http://nightingale.lcs.mit.edu/cgi-bin/score )
  174. MultiCoil - ( http://nightingale.lcs.mit.edu/cgi-bin/multicoil )
  175. GOR Method - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_gor4.html )
  176. NNmethod - SIMPA96 - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_simpa96.html )
  177. nnPredict Method  - Neural network method  - ( http://www.cmpharm.ucsf.edu/~nomi/nnpredict.html )
  178. Neural network method - HNN - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_nn.html )
  179. PSA - ( http://bmerc-www.bu.edu/psa/request.html )
  180. PsiPred - ( http://bioinf.cs.ucl.ac.uk/psipred/ )
  181. Self Optimized Prediction Method - (SOPMA) - ( http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html )
  182. Profilescan - ( http://hits.isb-sib.ch/cgi-bin/PFSCAN/ )
  183. FrameProfilescan - ( www.isrec.isb-sib.ch/software/PFRAMESCAN_form.html )
  184. PileUp - ( http://biobase.dk/gcgmanual/pileup.html )
  185. LineUp - ( http://biobase.dk/gcgmanual/lineup.html )
  186. Pretty - ( http://biobase.dk/gcgmanual/pretty.html )
  187. ProfileMake - ( http://biobase.dk/gcgmanual/profilemake.html )
  188. ProfileSearch - ( http://biobase.dk/gcgmanual/profilesegments.html )
  189. ProfileGap - ( http://biobase.dk/gcgmanual/profilegap.html )
  190. HmmerIndex - http://biobase.dk/gcgmanual/hmmerindex.html )
  191. HmmerFetch - ( http://biobase.dk/gcgmanual/hmmerfetch.html )
  192. Motifs - ( http://biobase.dk/gcgmanual/motifs.html )
  193. Conserved Pattern search - Pratt - ( www.ebi.ac.uk/pratt/ )
  194. Alignmed Segment Statistical Evaluation (ASSET) - ( http://bip.weizmann.ac.il/software/sg_software/asset.html )
  195. Motif search - Hits - ( http://hits.isb-sib.ch/ )
  196. MEME - ( http://meme.sdsc.edu/meme/website/intro.html )
  197. Gibbs - ( http://bayesweb.wadsworth.org/gibbs/gibbs.html )
  198. ProDom - ( http://prodes.toulouse.inra.fr/prodom/2002.1/html/form.php?typeform=SPTR )
  199. PRINTS - ( http://bioin.man.ac.uk/dbbrowser/PRINTS/ )
  200. Pscan - ( www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/pscan.html )
  201. InterPro - ( www.ebi.ac.uk/interpro )
  202. STRUCTURE PREDICTION - MaxHom - ( www.embl-heidelberg.de/predictprotein/predictprotein.html )
  203. Consensus tool - ( www.bork.embl-heidelberg.de:8080/Alignment/consensus.html )
  204. MODELLER - http://guitar.rockefeller.edu/modeller/modeller.html )
  205. SWISS-MODEL - ( www.expasy.org/swissmod/SWISSMODEL.html )
  206. 123-D+ - ( http://123-D.ncifcrf.gov/123-D+.html )
  207. LIBRA I - ( www.ddbj.nig.ac.jp/htmls/E-mail/libra/LIBRA_I.html )
  208. TOPITS - ( http://cubic.bioc.columbia.edu/predictprotein )
  209. Threader - ( http://bioinf.cs.ucl.ac.uk/threader/threader.html )
  210. ROSETTA PREDICTION - ( www.bioinfo.rpi.edu/~bystrc/hmmstr/server.php )
  211. Petra - ( www-cryst.bioc.cam.ac.uk/cgi-bin/cgiwrap/charlotte/pet.cgi )
  212. Inter residue contact prediction - PDGCON - ( www.pdg.cnb.uam.es:8081/pdg_contact_pred.html )
  213. CORNET - ( http://prion.biocomp.unibo.it/cornet.html )
  214. Interstrand contact prediction - AGADIR - ( http://embl-heidelberg.de/Services/serramp/agador/agador-start.html )
  215. PROTEIN FUNCTION - HNB network : ( http://dag.embl-heidelberg.de/hnb_cgi/show_overview_page.pl?MenuPath=%2Ftool_index )
  216. GeneQuiz : ( http://bric.postech.ac.kr/seminar/kjh/GeneQuiz_biowave/tsld001.htm )
  217. EXPASY Translation Tool - ( http://ca.expasy.ch/tools/dna.html )
  218. Transeq - ( www.ebi.ac.uk/emboss/transeq )
  219. Backtranslation - ( www.entelechon.com/eng/backtranslation.html )
  220. TECHNIQUES IN PROTEOMICS - 2D PAGE - ( http://us.expasy.org/ch2d/ )
  221. HEART- 2D PAGE - ( http://userpage.chemie.fu-berlin.de/~pleiss/dhzb.html )
  222. Melanie 3 - ( http://us.expasy.org/melanie )
  223. Protein Prospector - ( http://prospector.ucsf.edu )
  224. Database of Interacting Proteins - DIPTM - ( http://dip.doe-mbi.ucla.edu )
  225. POST TRANSLATIONAL MODIFICATION - PSORT - ( http://psort.nibb.ac.jp  )
  226. SignalP - ( www.cbs.dtu.dk/services/SignalP/ )
  227. ChloroP - ( www.cbs.dtu.dk/services/ChloroP/ )
  228. TargetP - ( www.cbs.dtu.dk/services/TargetP/ )
  229. Mitochondrial targets - Mitoprot II - ( http://bioinformer.ebi.ac.uk/newsletter/archieves/2/mitoprotii.html )
  230. Predotar - ( www.inra.fr/predotar )
  231. NetOGlyc - ( www.cbs.dtu.dk/services/NetOGlyc/ )
  232. Big-PI Predictor - ( http://mendal.imp.univie.ac.at/sat/gpi/gpi_server.html )
  233. NetPhos - ( www.cbs.dtu.dk/services/NetPhos/ )
  234. FindMod - ( http://us.expasy.org/tools/findmod/ )
  235. GlycoMod - ( http://us.expasy.org/tools/glycomod/ )
  236. Delta Mass - ( www.abrf.org/index.cfm/dm.home )
  237.  Scansite - ( http://scansite.mit.edu )
  238. PATHWAYS - Regulon DB - ( www.cifn.unam.mx/Computational_Genomics/regulondb/ )
  239. WIT - ( http://wit.mcs.anl.gov/WIT2/ )
  240. UM BBD - ( http://umbbd.ahc.umn.edu )
  241. EcoCyc - ( www.ecocyc.org )
  242. MetaCyc - ( http://biocyc.org/metacyc )
  243. Enzymes and Metabolic Pathways - ( http://emp.mcs.anl.gov )
  244. BRITE - ( www.genome.ad.jp/brite )
  245. GeNet - ( www.csa.ru/Inst/gorb_dep/inbios/genet/genet.htm )
  246. GenePath - ( http://magix.fri.uni-lj.si/genepath )
  247. Cell Signalling Networks Database ( CSNDB) - ( http://geo.nihs.go.jp/csndb/ )
  248. GenMAPP - ( www.genmapp.org )
  249. BioMiner- www.zbi.uni-saarland.de/chair/projects/BioMiner/index.shtml )
  250. Signalling Pathway Database (SPAD)  - ( www.grt.kyushu-u.ac.jp/spad/ )
  251. GSCope - ( http://gscope.gsc.riken.go.jp )
  252. Pathway Studio - ( www.ariadnegenomics.com/products/pathway.html )
  253. Pathtracker - ( http://ocimumbio.com/products/products_pt.htm )
  254. Metabolic Networks - Fractal Genomics - ( www.fractalgenomics.com/technology/index.html )
  255. Metabolic control Analysis  - Gepasi - ( www.gepasi.org/gepasi.html )
  256. Winscamp - ( www.cds.caltech.edu/~hsauro/Scamp/scamp.htm )
  257. SIMULATION OF CELLULAR ACTIVITIES - E-Cell - ( www.e-cell.org/ )
  258. Virtual Cell - ( www.nrcam.uchc.edu/index.html )
  259. BIOLOGICAL MARKUP LANGUAGES - CellML -  ( www.ce..ml.org/  )
  260. Bioinformatic Sequence Markup Language (BSML) - ( www.labbook.com/products/xmlbsml.asp )
  261. Biopolymer Markup Language (BIOML) - ( www.bioml.com/ )
  262. Chemical Markup Language (CML) - ( www.xml-cml.org/ )
  263. Gene Expression Markup Language (GEML) - ( www.rosettabio.com/products/conductor/geml/default.htm )
  264. GeneXML - ( www.ncgr.org/genex/genexml.html )
  265. General Feature Format (GFF) - ( www.sanger.ac.uk/Software/formats/GFF/ )
  266. OMG's Life Sciences Project - ( www.omg.org/homepage/lsr/ )
  267. eXtensible Multi Dimensional Simulator ( XMDS) - ( www.physics.uq.edu.au/xmds/ )
  268. Extensible Scientific Interchange Language - ( www.cacr.caltech.edu/SDA/xsil/ )
  269. Ligand Protein Data Base (LPDB) - ( http://lpdb.scripps.edu/ )
  270. Standard Genetic Code - ( http://micro.nwfsc.noaa.gov/protocols/genecode.html )
  271. Finding siRNA in m-RNA - siRNA - ( www.hgmp.mrc.ac.uk/Software/EMBOSS/Apps/sirna.html )
  272. DOCKING - Biognostik - ( www.biocan.com/mbio/antisens.htm )
  273. Soma Logic - ( www.somalogic.com )
  274. Aptamer database - ( http://aptamer.icmb.utexas.edu/ )
  275. SELEX - ( www.archemix.com/tech_aptsel.html )
  276. Affymax - ( www.affymax.com )
  277. Selectide - ( www.selectide.com )
  278. Lion Biosciences - ( www.lionbiosciences.com )
  279. Available Chemicals Directory (ACD) - ( www.mdl.com )
  280. Cambridge Structural Database (CSD) - ( www.ccdc.cam.ac.uk/prods/csd/csd.html )
  281. Comprehensive Medicinal Chemistry database (CMC) - ( http://joel.mdli.com/products/knowledge/medicinal_chem/index.jsp )
  282. World Drug Index (WDI) - ( www.daylight.com/daycgi/wdi/ )
  283. PROCHECK - ( www.biochem.ucl.ac.uk/~roman/procheck/procheck.html )
  284. G-Protein coupled Receptors - ( www.gpcr.org/7tm/ )
  285. ClogP - ( www.biobyte.com/bb/prod/clogp40.html ) or ( www.daylight.com/daycgi/clogp )
  286. Conformers - ( www.accelrys.com/cerius2/conformers.html )
  287. Rubicon - ( www.daylight.com/products/rubicon.html )
  288. DISCOtech - ( www.tripos.com/sciTech/inSillicoDisc/pharmaPerception/discotech.html )
  289. Oxford Molecular tool - oxmol - ( www.accelrys.com/about/oxmol.html )
  290. Molecular Graphics - ( http://scsg9.unige.ch/fln/eng/toc.html )
  291. Molecular Modelling toolbox - ( http://webnet.mednet.gu.se/chemistry/molmod/ )
  292. XED - ( www.ch.cam.ac.uk/SGTL/xed/ )
  293. AutoDock - ( www.scripps.edu/pub/olson-web/doc/autodock/ )
  294. Dock - ( http://dock.compbio.ucsf.edu/ )
  295. LUDI - ( http://www.accelrys.com/cerius2/c2ludi.html )
  296. ADME - ( www.accelrys.com/pharma/cheminformatics/adme.html )
  297. TOPKAT - ( www.accelrys.com/products/topkat/ )
  298. DDBJ - ( www.ddbj.nig.ac.jp )
  299. MIPS ALERT  - ( www.mips.biochem.mpg.de/mips/programs/alert.html)

  300. WHATIF SERVER -  ( http://swift.cmbi.kun.nl/WIWWWI/ )