Articles:

Michael Y. Galperin
The Molecular Biology Database Collection: 2006 update
Nucl. Acids Res. 2006 34: D3-D5; doi:10.1093/nar/gkj162 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Database Summaries]   OPEN ACCESS ARTICLE  

Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori, and Yoshio Tateno
DDBJ in preparation for overview of research activities behind data submissions
Nucl. Acids Res. 2006 34: D6-D9; doi:10.1093/nar/gkj111 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Guy Cochrane, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Michelle McHale, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, and Rolf Apweiler
EMBL Nucleotide Sequence Database: developments in 2005
Nucl. Acids Res. 2006 34: D10-D15; doi:10.1093/nar/gkj130 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, and David L. Wheeler
GenBank
Nucl. Acids Res. 2006 34: D16-D20; doi:10.1093/nar/gkj157 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Namshin Kim, Pora Kim, Seungyoon Nam, Seokmin Shin, and Sanghyuk Lee
ChimerDB—a knowledgebase for fusion sequences
Nucl. Acids Res. 2006 34: D21-D24; doi:10.1093/nar/gkj019 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

K. T. Nishant, Chetan Kumar, and M. R. S. Rao
HUMHOT: a database of human meiotic recombination hot spots
Nucl. Acids Res. 2006 34: D25-D28; doi:10.1093/nar/gkj009 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Rivka L. Glaser, Joshua P. Ramsay, and Ian M. Morison
The imprinted gene and parent-of-origin effect database now includes parental origin of de novo mutations
Nucl. Acids Res. 2006 34: D29-D31; doi:10.1093/nar/gkj101 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

P. Siguier, J. Perochon, L. Lestrade, J. Mahillon, and M. Chandler
ISfinder: the reference centre for bacterial insertion sequences
Nucl. Acids Res. 2006 34: D32-D36; doi:10.1093/nar/gkj014 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Grant H. Jacobs, Peter A. Stockwell, Warren P. Tate, and Chris M. Brown
Transterm—extended search facilities and improved integration with other databases
Nucl. Acids Res. 2006 34: D37-D40; doi:10.1093/nar/gkj159 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett, III, Eric L. Cabot, Aaron Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, and Nicole T. Perna
ASAP: a resource for annotating, curating, comparing, and disseminating genomic data
Nucl. Acids Res. 2006 34: D41-D45; doi:10.1093/nar/gkj164 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Stefan Stamm, Jean-Jack Riethoven, Vincent Le Texier, Chellappa Gopalakrishnan, Vasudev Kumanduri, Yesheng Tang, Nuno L. Barbosa-Morais, and Thangavel Alphonse Thanaraj
ASD: a bioinformatics resource on alternative splicing
Nucl. Acids Res. 2006 34: D46-D55; doi:10.1093/nar/gkj031 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Dirk Holste, George Huo, Vivian Tung, and Christopher B. Burge
HOLLYWOOD: a comparative relational database of alternative splicing
Nucl. Acids Res. 2006 34: D56-D62; doi:10.1093/nar/gkj048 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Enrique Blanco, Domènec Farré, M. Mar Albà, Xavier Messeguer, and Roderic Guigó
ABS: a database of Annotated regulatory Binding Sites from orthologous promoters
Nucl. Acids Res. 2006 34: D63-D67; doi:10.1093/nar/gkj116 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

G. Robertson, M. Bilenky, K. Lin, A. He, W. Yuen, M. Dagpinar, R. Varhol, K. Teague, O. L. Griffith, X. Zhang, Y. Pan, M. Hassel, M. C. Sleumer, W. Pan, E. D. Pleasance, M. Chuang, H. Hao, Y. Y. Li, N. Robertson, C. Fjell, B. Li, S. B. Montgomery, T. Astakhova, J. Zhou, J. Sander, A. S. Siddiqui, and S. J. M. Jones
cisRED: a database system for genome-scale computational discovery of regulatory elements
Nucl. Acids Res. 2006 34: D68-D73; doi:10.1093/nar/gkj075 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Sarah K. Kummerfeld and Sarah A. Teichmann
DBD: a transcription factor prediction database
Nucl. Acids Res. 2006 34: D74-D81; doi:10.1093/nar/gkj131 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Christoph D. Schmid, Rouaïda Perier, Viviane Praz, and Philipp Bucher
EPD in its twentieth year: towards complete promoter coverage of selected model organisms
Nucl. Acids Res. 2006 34: D82-D85; doi:10.1093/nar/gkj146 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Riu Yamashita, Yutaka Suzuki, Hiroyuki Wakaguri, Katsuki Tsuritani, Kenta Nakai, and Sumio Sugano
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006
Nucl. Acids Res. 2006 34: D86-D89; doi:10.1093/nar/gkj129 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Vidhya Jagannathan, Emmanuelle Roulet, Mauro Delorenzi, and Philipp Bucher
HTPSELEX—a database of high-throughput SELEX libraries for transcription factor binding sites
Nucl. Acids Res. 2006 34: D90-D94; doi:10.1093/nar/gkj049 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Dominique Vlieghe, Albin Sandelin, Pieter J. De Bleser, Kris Vleminckx, Wyeth W. Wasserman, Frans van Roy, and Boris Lenhard
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles
Nucl. Acids Res. 2006 34: D95-D97; doi:10.1093/nar/gkj115 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim H.-M. Huang, and Ramana V. Davuluri
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data
Nucl. Acids Res. 2006 34: D98-D103; doi:10.1093/nar/gkj096 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Xin Chen, Jian-min Wu, Klaus Hornischer, Alexander Kel, and Edgar Wingender
TiProD: the Tissue-specific Promoter Database
Nucl. Acids Res. 2006 34: D104-D107; doi:10.1093/nar/gkj113 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

V. Matys, O. V. Kel-Margoulis, E. Fricke, I. Liebich, S. Land, A. Barre-Dirrie, I. Reuter, D. Chekmenev, M. Krull, K. Hornischer, N. Voss, P. Stegmaier, B. Lewicki-Potapov, H. Saxel, A. E. Kel, and E. Wingender
TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes
Nucl. Acids Res. 2006 34: D108-D110; doi:10.1093/nar/gkj143 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Tala Bakheet, Bryan R. G. Williams, and Khalid S. A. Khabar
ARED 3.0: the large and diverse AU-rich transcriptome
Nucl. Acids Res. 2006 34: D111-D114; doi:10.1093/nar/gkj052 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Priyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils, Herrmann-Josef Gröne, Norbert Gretz, and Benedikt Brors
Argonaute—a database for gene regulation by mammalian microRNAs
Nucl. Acids Res. 2006 34: D115-D118; doi:10.1093/nar/gkj093 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Rumen Kostadinov, Nishtha Malhotra, Manuel Viotti, Robert Shine, Lawrence D'Antonio, and Paramjeet Bagga
GRSDB: a database of quadruplex forming G-rich sequences in alternatively processed mammalian pre-mRNA sequences
Nucl. Acids Res. 2006 34: D119-D124; doi:10.1093/nar/gkj073 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Martin Mokrejs, Václav Vopálensky, Ondrej Kolenaty, Tomás Masek, Zuzana Feketová, Petra Sekyrová, Barbora Skaloudová, Vítezslav Kríz, and Martin Pospísek
IRESite: the database of experimentally verified IRES structures (http://www.iresite.org/)
Nucl. Acids Res. 2006 34: D125-D130; doi:10.1093/nar/gkj081 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Liliana R. Stefan, Rui Zhang, Aaron G. Levitan, Donna K. Hendrix, Steven E. Brenner, and Stephen R. Holbrook
MeRNA: a database of metal ion binding sites in RNA structures
Nucl. Acids Res. 2006 34: D131-D134; doi:10.1093/nar/gkj058 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Paul W.C. Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, and Ivo L. Hofacker
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes
Nucl. Acids Res. 2006 34: D135-D139; doi:10.1093/nar/gkj135 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, and Anton J. Enright
miRBase: microRNA sequences, targets and gene nomenclature
Nucl. Acids Res. 2006 34: D140-D144; doi:10.1093/nar/gkj112 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, and Janusz M. Bujnicki
MODOMICS: a database of RNA modification pathways
Nucl. Acids Res. 2006 34: D145-D149; doi:10.1093/nar/gkj084 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, and Runsheng Chen
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database
Nucl. Acids Res. 2006 34: D150-D152; doi:10.1093/nar/gkj025 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

A. Olson, N. Sheth, J. S. Lee, G. Hannon, and R. Sachidanandam
RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs
Nucl. Acids Res. 2006 34: D153-D157; doi:10.1093/nar/gkj051 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Laurent Lestrade and Michel J. Weber
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
Nucl. Acids Res. 2006 34: D158-D162; doi:10.1093/nar/gkj002 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ebbe Sloth Andersen, Magnus Alm Rosenblad, Niels Larsen, Jesper Cairo Westergaard, Jody Burks, Iwona K. Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, and Christian Zwieb
The tmRDB and SRPDB resources
Nucl. Acids Res. 2006 34: D163-D168; doi:10.1093/nar/gkj142 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

H. W. Mewes, D. Frishman, K. F. X. Mayer, M. Münsterkötter, O. Noubibou, P. Pagel, T. Rattei, M. Oesterheld, A. Ruepp, and V. Stümpflen
MIPS: analysis and annotation of proteins from whole genomes in 2005
Nucl. Acids Res. 2006 34: D169-D172; doi:10.1093/nar/gkj148 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Stephen T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tugba O. Suzek, Roman Tatusov, Tatiana A. Tatusova, Lukas Wagner, and Eugene Yaschenko
Database resources of the National Center for Biotechnology Information
Nucl. Acids Res. 2006 34: D173-D180; doi:10.1093/nar/gkj158 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Milton H. Saier, Jr, Can V. Tran, and Ravi D. Barabote
TCDB: the Transporter Classification Database for membrane transport protein analyses and information
Nucl. Acids Res. 2006 34: D181-D186; doi:10.1093/nar/gkj001 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, and Baris Suzek
The Universal Protein Resource (UniProt): an expanding universe of protein information
Nucl. Acids Res. 2006 34: D187-D191; doi:10.1093/nar/gkj161 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jason P. Mulvenna, Conan Wang, and David J. Craik
CyBase: a database of cyclic protein sequence and structure
Nucl. Acids Res. 2006 34: D192-D194; doi:10.1093/nar/gkj005 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

M. D. Shaji Kumar and M. Michael Gromiha
PINT: Protein–protein Interactions Thermodynamic Database
Nucl. Acids Res. 2006 34: D195-D198; doi:10.1093/nar/gkj017 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Christopher P. Toseland, Helen McSparron, Matthew N. Davies, and Darren R. Flower
PPD v1.0—an integrated, web-accessible database of experimentally determined protein pKa values
Nucl. Acids Res. 2006 34: D199-D203; doi:10.1093/nar/gkj035 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

M. D. Shaji Kumar, K. Abdulla Bava, M. Michael Gromiha, Ponraj Prabakaran, Koji Kitajima, Hatsuho Uedaira, and Akinori Sarai
ProTherm and ProNIT: thermodynamic databases for proteins and protein–nucleic acid interactions
Nucl. Acids Res. 2006 34: D204-D206; doi:10.1093/nar/gkj103 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Michelle K. M. Chow, Abdullah A. Amin, Kate F. Fulton, Thushan Fernando, Lawrence Kamau, Chris Batty, Michael Louca, Storm Ho, James C. Whisstock, Stephen P. Bottomley, and Ashley M. Buckle
The REFOLD database: a tool for the optimization of protein expression and refolding
Nucl. Acids Res. 2006 34: D207-D212; doi:10.1093/nar/gkj080 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, and Rohan D. Teasdale
LOCATE: a mouse protein subcellular localization database
Nucl. Acids Res. 2006 34: D213-D217; doi:10.1093/nar/gkj069 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Anthony Kar Lun Leung, Laura Trinkle-Mulcahy, Yun Wah Lam, Jens S. Andersen, Matthias Mann, and Angus I. Lamond
NOPdb: Nucleolar Proteome Database
Nucl. Acids Res. 2006 34: D218-D220; doi:10.1093/nar/gkj004 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Rainer B. Lanz, Zeljko Jericevic, William J. Zuercher, Chris Watkins, David L. Steffen, Ronald Margolis, and Neil J. McKenna
Nuclear Receptor Signaling Atlas (http://www.nursa.org/): hyperlinking the nuclear receptor signaling community
Nucl. Acids Res. 2006 34: D221-D226; doi:10.1093/nar/gkj029 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, and Christian J. A. Sigrist
The PROSITE database
Nucl. Acids Res. 2006 34: D227-D230; doi:10.1093/nar/gkj063 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Nicola D. Gold and Richard M. Jackson
SitesBase: a database for structure-based protein–ligand binding site comparisons
Nucl. Acids Res. 2006 34: D231-D234; doi:10.1093/nar/gkj062 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Aaron Birkland and Golan Yona
BIOZON: a hub of heterogeneous biological data
Nucl. Acids Res. 2006 34: D235-D242; doi:10.1093/nar/gkj153 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

V. S. Gowri, O. Krishnadev, C. S. Swamy, and N. Srinivasan
MulPSSM: a database of multiple position-specific scoring matrices of protein domain families
Nucl. Acids Res. 2006 34: D243-D246; doi:10.1093/nar/gkj043 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, and Alex Bateman
Pfam: clans, web tools and services
Nucl. Acids Res. 2006 34: D247-D251; doi:10.1093/nar/gkj149 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Thomas Rattei, Roland Arnold, Patrick Tischler, Dominik Lindner, Volker Stümpflen, and H. Werner Mewes
SIMAP: the similarity matrix of proteins
Nucl. Acids Res. 2006 34: D252-D256; doi:10.1093/nar/gkj106 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ivica Letunic, Richard R. Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, and Peer Bork
SMART 5: domains in the context of genomes and networks
Nucl. Acids Res. 2006 34: D257-D260; doi:10.1093/nar/gkj079 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Alexander A. Zamyatnin, Alexander S. Borchikov, Michail G. Vladimirov, and Olga L. Voronina
The EROP-Moscow oligopeptide database
Nucl. Acids Res. 2006 34: D261-D266; doi:10.1093/nar/gkj008 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Marco Donizelli, Marie-Ange Djite, and Nicolas Le Novère
LGICdb: a manually curated sequence database after the genomes
Nucl. Acids Res. 2006 34: D267-D269; doi:10.1093/nar/gkj104 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Neil D. Rawlings, Fraser R. Morton, and Alan J. Barrett
MEROPS: the peptidase database
Nucl. Acids Res. 2006 34: D270-D272; doi:10.1093/nar/gkj089 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Chittibabu Guda, Lipika R. Pal, and Ilya N. Shindyalov
DMAPS: a database of multiple alignments for protein structures
Nucl. Acids Res. 2006 34: D273-D276; doi:10.1093/nar/gkj018 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Zhanwen Li, Yuzhen Ye, and Adam Godzik
Flexible Structural Neighborhood—a database of protein structural similarities and alignments
Nucl. Acids Res. 2006 34: D277-D280; doi:10.1093/nar/gkj124 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Corin Yeats, Michael Maibaum, Russell Marsden, Mark Dibley, David Lee, Sarah Addou, and Christine A. Orengo
Gene3D: modelling protein structure, function and evolution
Nucl. Acids Res. 2006 34: D281-D284; doi:10.1093/nar/gkj057 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ganesan Pugalenthi, Anirban Bhaduri, and R. Sowdhamini
iMOTdb—a comprehensive collection of spatially interacting motifs in proteins
Nucl. Acids Res. 2006 34: D285-D286; doi:10.1093/nar/gkj125 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

M. Tagari, J. Tate, G. J. Swaminathan, R. Newman, A. Naim, W. Vranken, A. Kapopoulou, A. Hussain, J. Fillon, K. Henrick, and S. Velankar
E-MSD: improving data deposition and structure quality
Nucl. Acids Res. 2006 34: D287-D290; doi:10.1093/nar/gkj163 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, M. S. Madhusudhan, Andrea Rossi, Marc Marti-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, and Andrej Sali
MODBASE: a database of annotated comparative protein structure models and associated resources
Nucl. Acids Res. 2006 34: D291-D295; doi:10.1093/nar/gkj059 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Samuel Flores, Nathaniel Echols, Duncan Milburn, Brandon Hespenheide, Kevin Keating, Jason Lu, Stephen Wells, Eric Z. Yu, Michael Thorpe, and Mark Gerstein
The Database of Macromolecular Motions: new features added at the decade mark
Nucl. Acids Res. 2006 34: D296-D301; doi:10.1093/nar/gkj046 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Andrei Kouranov, Lei Xie, Joanna de la Cruz, Li Chen, John Westbrook, Philip E. Bourne, and Helen M. Berman
The RCSB PDB information portal for structural genomics
Nucl. Acids Res. 2006 34: D302-D305; doi:10.1093/nar/gkj120 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, and Anna Tramontano
The PMDB Protein Model Database
Nucl. Acids Res. 2006 34: D306-D309; doi:10.1093/nar/gkj105 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Christof Winter, Andreas Henschel, Wan Kyu Kim, and Michael Schroeder
SCOPPI: a structural classification of protein–protein interfaces
Nucl. Acids Res. 2006 34: D310-D314; doi:10.1093/nar/gkj099 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jürgen Kopp and Torsten Schwede
The SWISS-MODEL Repository: new features and functionalities
Nucl. Acids Res. 2006 34: D315-D318; doi:10.1093/nar/gkj056 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Tina A. Eyre, Fabrice Ducluzeau, Tam P. Sneddon, Sue Povey, Elspeth A. Bruford, and Michael J. Lush
The HUGO Gene Nomenclature Database, 2006 updates
Nucl. Acids Res. 2006 34: D319-D321; doi:10.1093/nar/gkj147 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Gene Ontology Consortium
The Gene Ontology (GO) project in 2006
Nucl. Acids Res. 2006 34: D322-D326; doi:10.1093/nar/gkj021 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Simon Whelan, Paul I. W. de Bakker, Emmanuel Quevillon, Nicolas Rodriguez, and Nick Goldman
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees
Nucl. Acids Res. 2006 34: D327-D331; doi:10.1093/nar/gkj087 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Konstantinos Liolios, Nektarios Tavernarakis, Philip Hugenholtz, and Nikos C. Kyrpides
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide
Nucl. Acids Res. 2006 34: D332-D334; doi:10.1093/nar/gkj145 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Roy R. Chaudhuri and Mark J. Pallen
xBASE, a collection of online databases for bacterial comparative genomics
Nucl. Acids Res. 2006 34: D335-D337; doi:10.1093/nar/gkj140 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, and Odile Lecompte
ICDS database: interrupted CoDing sequences in prokaryotic genomes
Nucl. Acids Res. 2006 34: D338-D343; doi:10.1093/nar/gkj060 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavromatis, Natalia Ivanova, and Nikos C. Kyrpides
The integrated microbial genomes (IMG) system
Nucl. Acids Res. 2006 34: D344-D348; doi:10.1093/nar/gkj024 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ingo Paulsen and Arndt von Haeseler
INVHOGEN: a database of homologous invertebrate genes
Nucl. Acids Res. 2006 34: D349-D353; doi:10.1093/nar/gkj100 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, and Mika Hirakawa
From genomics to chemical genomics: new developments in KEGG
Nucl. Acids Res. 2006 34: D354-D357; doi:10.1093/nar/gkj102 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, and Minoru Kanehisa
ODB: a database of operons accumulating known operons across multiple genomes
Nucl. Acids Res. 2006 34: D358-D362; doi:10.1093/nar/gkj037 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Feng Chen, Aaron J. Mackey, Christian J. Stoeckert, Jr, and David S. Roos
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
Nucl. Acids Res. 2006 34: D363-D368; doi:10.1093/nar/gkj123 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Natalia Maltsev, Elizabeth Glass, Dinanath Sulakhe, Alexis Rodriguez, Mustafa H. Syed, Tanuja Bompada, Yi Zhang, and Mark D'Souza
PUMA2—grid-based high-throughput analysis of genomes and metabolic pathways
Nucl. Acids Res. 2006 34: D369-D372; doi:10.1093/nar/gkj095 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Huiquan Wang, Miroslava Kaloper, and Craig J. Benham
SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes
Nucl. Acids Res. 2006 34: D373-D378; doi:10.1093/nar/gkj007 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Sucheta Tripathy, Varun N. Pandey, Bing Fang, Fidel Salas, and Brett M. Tyler
VMD: a community annotation database for oomycetes and microbial genomes
Nucl. Acids Res. 2006 34: D379-D381; doi:10.1093/nar/gkj042 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Michael J. Adams and John F. Antoniw
DPVweb: a comprehensive database of plant and fungal virus genes and genomes
Nucl. Acids Res. 2006 34: D382-D385; doi:10.1093/nar/gkj023 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Craig M. Shepherd, Ian A. Borelli, Gabriel Lander, Padmaja Natarajan, Vinay Siddavanahalli, Chandrajit Bajaj, John E. Johnson, Charles L. Brooks, III, and Vijay S. Reddy
VIPERdb: a relational database for structural virology
Nucl. Acids Res. 2006 34: D386-D389; doi:10.1093/nar/gkj032 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Thierry Lombardot, Renzo Kottmann, Hauke Pfeffer, Michael Richter, Hanno Teeling, Christian Quast, and Frank Oliver Glöckner
Megx.net—database resources for marine ecological genomics
Nucl. Acids Res. 2006 34: D390-D393; doi:10.1093/nar/gkj070 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Heladia Salgado, Socorro Gama-Castro, Martín Peralta-Gil, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Alberto Santos-Zavaleta, Irma Martínez-Flores, Verónica Jiménez-Jacinto, César Bonavides-Martínez, Juan Segura-Salazar, Agustino Martínez-Antonio, and Julio Collado-Vides
RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions
Nucl. Acids Res. 2006 34: D394-D397; doi:10.1093/nar/gkj156 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jian Yang, Lihong Chen, Jun Yu, Lilian Sun, and Qi Jin
ShiBASE: an integrated database for comparative genomics of Shigella
Nucl. Acids Res. 2006 34: D398-D401; doi:10.1093/nar/gkj033 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Guido Dieterich, Uwe Kärst, Elmar Fischer, Jürgen Wehland, and Lothar Jänsch
LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria species
Nucl. Acids Res. 2006 34: D402-D406; doi:10.1093/nar/gkj071 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Kevin L. Schneider, Katherine S. Pollard, Robert Baertsch, Andy Pohl, and Todd M. Lowe
The UCSC Archaeal Genome Browser
Nucl. Acids Res. 2006 34: D407-D410; doi:10.1093/nar/gkj134 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Gopa R. Mishra, M. Suresh, K. Kumaran, N. Kannabiran, Shubha Suresh, P. Bala, K. Shivakumar, N. Anuradha, Raghunath Reddy, T. Madhan Raghavan, Shalini Menon, G. Hanumanthu, Malvika Gupta, Sapna Upendran, Shweta Gupta, M. Mahesh, Bincy Jacob, Pinky Mathew, Pritam Chatterjee, K. S. Arun, Salil Sharma, K. N. Chandrika, Nandan Deshpande, Kshitish Palvankar, R. Raghavnath, R. Krishnakanth, Hiren Karathia, B. Rekha, Rashmi Nayak, G. Vishnupriya, H. G. Mohan Kumar, M. Nagini, G. S. Sameer Kumar, Rojan Jose, P. Deepthi, S. Sujatha Mohan, T. K. B. Gandhi, H. C. Harsha, Krishna S. Deshpande, Malabika Sarker, T. S. Keshava Prasad, and Akhilesh Pandey
Human protein reference database—2006 update
Nucl. Acids Res. 2006 34: D411-D414; doi:10.1093/nar/gkj141 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, and Stefan Wiemann
The LIFEdb database in 2006
Nucl. Acids Res. 2006 34: D415-D418; doi:10.1093/nar/gkj139 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Mark Heiges, Haiming Wang, Edward Robinson, Cristina Aurrecoechea, Xin Gao, Nivedita Kaluskar, Philippa Rhodes, Sammy Wang, Cong-Zhou He, Yanqi Su, John Miller, Eileen Kraemer, and Jessica C. Kissinger
CryptoDB: a Cryptosporidium bioinformatics resource update
Nucl. Acids Res. 2006 34: D419-D422; doi:10.1093/nar/gkj078 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Rex L. Chisholm, Pascale Gaudet, Eric M. Just, Karen E. Pilcher, Petra Fey, Sohel N. Merchant, and Warren A. Kibbe
dictyBase, the model organism database for Dictyostelium discoideum
Nucl. Acids Res. 2006 34: D423-D427; doi:10.1093/nar/gkj090 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Fernán Agüero, Wenlong Zheng, D. Brent Weatherly, Pablo Mendes, and Jessica C. Kissinger
TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi
Nucl. Acids Res. 2006 34: D428-D431; doi:10.1093/nar/gkj108 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

David Sherman, Pascal Durrens, Florian Iragne, Emmanuelle Beyne, Macha Nikolski, and Jean-Luc Souciet
Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
Nucl. Acids Res. 2006 34: D432-D435; doi:10.1093/nar/gkj160 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Ulrich Güldener, Martin Münsterkötter, Matthias Oesterheld, Philipp Pagel, Andreas Ruepp, Hans-Werner Mewes, and Volker Stümpflen
MPact: the MIPS protein interaction resource on yeast
Nucl. Acids Res. 2006 34: D436-D441; doi:10.1093/nar/gkj003 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jodi E. Hirschman, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Michael S. Livstone, Robert Nash, Julie Park, Rose Oughtred, Marek Skrzypek, Barry Starr, Chandra L. Theesfeld, Jennifer Williams, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Stuart Miyasato, Anand Sethuraman, Mark Schroeder, Mayank K. Thanawala, Shuai Weng, Kara Dolinski, David Botstein, and J. Michael Cherry
Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome
Nucl. Acids Res. 2006 34: D442-D445; doi:10.1093/nar/gkj117 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Miguel C. Teixeira, Pedro Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, and Isabel Sá-Correia
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
Nucl. Acids Res. 2006 34: D446-D451; doi:10.1093/nar/gkj013 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Kevin P. Byrne and Kenneth H. Wolfe
Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser
Nucl. Acids Res. 2006 34: D452-D455; doi:10.1093/nar/gkj041 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes, and Gerhard Adam
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum
Nucl. Acids Res. 2006 34: D456-D458; doi:10.1093/nar/gkj026 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Rainer Winnenburg, Thomas K. Baldwin, Martin Urban, Chris Rawlings, Jacob Köhler, and Kim E. Hammond-Kosack
PHI-base: a new database for pathogen host interactions
Nucl. Acids Res. 2006 34: D459-D464; doi:10.1093/nar/gkj047 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Kamal Gajendran, Michael D. Gonzales, Andrew Farmer, Eric Archuleta, Joe Win, Mark E. Waugh, and Sophien Kamoun
Phytophthora functional genomics database (PFGD): functional genomics of phytophthora–plant interactions
Nucl. Acids Res. 2006 34: D465-D470; doi:10.1093/nar/gkj119 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

David H. Johnson, Jun Tsao, Ming Luo, and Mike Carson
SGCEdb: a flexible database and web interface integrating experimental results and analysis for structural genomics focusing on Caenorhabditis elegans
Nucl. Acids Res. 2006 34: D471-D474; doi:10.1093/nar/gkj036 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Erich M. Schwarz, Igor Antoshechkin, Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Payan Canaran, Juancarlos Chan, Nansheng Chen, Wen J. Chen, Paul Davis, Tristan J. Fiedler, Lisa Girard, Todd W. Harris, Eimear E. Kenny, Ranjana Kishore, Dan Lawson, Raymond Lee, Hans-Michael Müller, Cecilia Nakamura, Phil Ozersky, Andrei Petcherski, Anthony Rogers, Will Spooner, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Richard Durbin, John Spieth, Lincoln D. Stein, and Paul W. Sternberg
WormBase: better software, richer content
Nucl. Acids Res. 2006 34: D475-D478; doi:10.1093/nar/gkj061 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

David Sims, Borisas Bursteinas, Qiong Gao, Marketa Zvelebil, and Buzz Baum
FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets
Nucl. Acids Res. 2006 34: D479-D483; doi:10.1093/nar/gkj038 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Gary Grumbling, Victor Strelets, and The FlyBase Consortium
FlyBase: anatomical data, images and queries
Nucl. Acids Res. 2006 34: D484-D488; doi:10.1093/nar/gkj068 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Ian Flockhart, Matthew Booker, Amy Kiger, Michael Boutros, Susan Armknecht, Nadire Ramadan, Kris Richardson, Andrew Xu, Norbert Perrimon, and Bernard Mathey-Prevot
FlyRNAi: the Drosophila RNAi screening center database
Nucl. Acids Res. 2006 34: D489-D494; doi:10.1093/nar/gkj114 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

James C. Sullivan, Joseph F. Ryan, James A. Watson, Jeramy Webb, James C. Mullikin, Daniel Rokhsar, and John R. Finnerty
StellaBase: The Nematostella vectensis Genomics Database
Nucl. Acids Res. 2006 34: D495-D499; doi:10.1093/nar/gkj020 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Nicholas A. Stover, Cynthia J. Krieger, Gail Binkley, Qing Dong, Dianna G. Fisk, Robert Nash, Anand Sethuraman, Shuai Weng, and J. Michael Cherry
Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research
Nucl. Acids Res. 2006 34: D500-D503; doi:10.1093/nar/gkj054 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Gary D. Bader, Michael P. Cary, and Chris Sander
Pathguide: a Pathway Resource List
Nucl. Acids Res. 2006 34: D504-D506; doi:10.1093/nar/gkj126 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Dawn Cotter, Andreia Maer, Chittibabu Guda, Brian Saunders, and Shankar Subramaniam
LMPD: LIPID MAPS proteome database
Nucl. Acids Res. 2006 34: D507-D510; doi:10.1093/nar/gkj122 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Rebecca Hopkinson, John Ingraham, Pallavi Kaipa, Markus Krummenacker, Suzanne Paley, John Pick, Seung Y. Rhee, Christophe Tissier, Peifen Zhang, and Peter D. Karp
MetaCyc: a multiorganism database of metabolic pathways and enzymes
Nucl. Acids Res. 2006 34: D511-D516; doi:10.1093/nar/gkj128 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Lynda B. M. Ellis, Dave Roe, and Lawrence P. Wackett
The University of Minnesota Biocatalysis/Biodegradation Database: the first decade
Nucl. Acids Res. 2006 34: D517-D521; doi:10.1093/nar/gkj076 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Peter Block, Christoph A. Sotriffer, Ingo Dramburg, and Gerhard Klebe
AffinDB: a freely accessible database of affinities for protein–ligand complexes from the PDB
Nucl. Acids Res. 2006 34: D522-D526; doi:10.1093/nar/gkj039 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Aylwin Ng, Borisas Bursteinas, Qiong Gao, Ewan Mollison, and Marketa Zvelebil
pSTIING: a ‘systems’ approach towards integrating signalling pathways, interaction and transcriptional regulatory networks in inflammation and cancer
Nucl. Acids Res. 2006 34: D527-D534; doi:10.1093/nar/gkj044 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Chris Stark, Bobby-Joe Breitkreutz, Teresa Reguly, Lorrie Boucher, Ashton Breitkreutz, and Mike Tyers
BioGRID: a general repository for interaction datasets
Nucl. Acids Res. 2006 34: D535-D539; doi:10.1093/nar/gkj109 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Anatolij Potapov, Ines Liebich, Jürgen Dönitz, Knut Schwarzer, Nicole Sasse, Torsten Schoeps, Torsten Crass, and Edgar Wingender
EndoNet: an information resource about endocrine networks
Nucl. Acids Res. 2006 34: D540-D545; doi:10.1093/nar/gkj121 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Mathias Krull, Susanne Pistor, Nico Voss, Alexander Kel, Ingmar Reuter, Deborah Kronenberg, Holger Michael, Knut Schwarzer, Anatolij Potapov, Claudia Choi, Olga Kel-Margoulis, and Edgar Wingender
TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations
Nucl. Acids Res. 2006 34: D546-D551; doi:10.1093/nar/gkj107 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Nicolas Sierro, Takehiro Kusakabe, Keun-Joon Park, Riu Yamashita, Kengo Kinoshita, and Kenta Nakai
DBTGR: a database of tunicate promoters and their regulatory elements
Nucl. Acids Res. 2006 34: D552-D555; doi:10.1093/nar/gkj064 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

E. Birney, D. Andrews, M. Caccamo, Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, S. Gräf, M. Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, A. Kähäri, A. Kasprzyk, D. Keefe, F. Kokocinski, E. Kulesha, D. London, I. Longden, C. Melsopp, P. Meidl, B. Overduin, A. Parker, G. Proctor, A. Prlic, M. Rae, D. Rios, S. Redmond, M. Schuster, I. Sealy, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, A. Stabenau, J. Stalker, S. Trevanion, A. Ureta-Vidal, J. Vogel, S. White, C. Woodwark, and T. J. P. Hubbard
Ensembl 2006
Nucl. Acids Res. 2006 34: D556-D561; doi:10.1093/nar/gkj133 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Judith A. Blake, Janan T. Eppig, Carol J. Bult, James A. Kadin, Joel E. Richardson, and Mouse Genome Database Group
The Mouse Genome Database (MGD): updates and enhancements
Nucl. Acids Res. 2006 34: D562-D567; doi:10.1093/nar/gkj085 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Andreas Ruepp, Octave Noubibou Doudieu, Jos van den Oever, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Goar Frishman, Corinna Montrone, Christine Skornia, Steffi Wanka, Thomas Rattei, Philipp Pagel, Louise Riley, Dmitrij Frishman, Dimitrij Surmeli, Igor V. Tetko, Matthias Oesterheld, Volker Stümpflen, and H. Werner Mewes
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context
Nucl. Acids Res. 2006 34: D568-D571; doi:10.1093/nar/gkj074 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Heng Li, Avril Coghlan, Jue Ruan, Lachlan James Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Weimou Zheng, Paramvir Dehal, Jun Wang, and Richard Durbin
TreeFam: a curated database of phylogenetic trees of animal gene families
Nucl. Acids Res. 2006 34: D572-D580; doi:10.1093/nar/gkj118 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Judy Sprague, Leyla Bayraktaroglu, Dave Clements, Tom Conlin, David Fashena, Ken Frazer, Melissa Haendel, Douglas G. Howe, Prita Mani, Sridhar Ramachandran, Kevin Schaper, Erik Segerdell, Peiran Song, Brock Sprunger, Sierra Taylor, Ceri E. Van Slyke, and Monte Westerfield
The Zebrafish Information Network: the zebrafish model organism database
Nucl. Acids Res. 2006 34: D581-D585; doi:10.1093/nar/gkj086 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Kremena V. Star, Quingbin Song, Andy Zhu, and Erwin P. Böttinger
QTL MatchMaker: a multi-species quantitative trait loci (QTL) database and query system for annotation of genes and QTL
Nucl. Acids Res. 2006 34: D586-D589; doi:10.1093/nar/gkj027 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

A. S. Hinrichs, D. Karolchik, R. Baertsch, G. P. Barber, G. Bejerano, H. Clawson, M. Diekhans, T. S. Furey, R. A. Harte, F. Hsu, J. Hillman-Jackson, R. M. Kuhn, J. S. Pedersen, A. Pohl, B. J. Raney, K. R. Rosenbloom, A. Siepel, K. E. Smith, C. W. Sugnet, A. Sultan-Qurraie, D. J. Thomas, H. Trumbower, R. J. Weber, M. Weirauch, A. S. Zweig, D. Haussler, and W. J. Kent
The UCSC Genome Browser Database: update 2006
Nucl. Acids Res. 2006 34: D590-D598; doi:10.1093/nar/gkj144 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Johann Lenffer, Frank W. Nicholas, Kao Castle, Arjun Rao, Stefan Gregory, Michael Poidinger, Matthew D. Mailman, and Shoba Ranganathan
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI
Nucl. Acids Res. 2006 34: D599-D601; doi:10.1093/nar/gkj152 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Ghazi O. Tadmouri, Mahmoud Taleb Al Ali, Sarah Al-Haj Ali, and Najib Al Khaja
CTGA: the database for genetic disorders in Arab populations
Nucl. Acids Res. 2006 34: D602-D606; doi:10.1093/nar/gkj015 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Xiaosong Wang, Haitao Zhao, Qingwen Xu, Weibo Jin, Changning Liu, Huagang Zhang, Zhibin Huang, Xinyu Zhang, Yu Zhang, Dianqi Xin, Andrew J. G. Simpson, Lloyd J. Old, Yanqun Na, Yi Zhao, and Weifeng Chen
HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma
Nucl. Acids Res. 2006 34: D607-D612; doi:10.1093/nar/gkj082 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Adil Elfilali, Séverine Lair, Catia Verbeke, Philippe La Rosa, François Radvanyi, and Emmanuel Barillot
ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis
Nucl. Acids Res. 2006 34: D613-D616; doi:10.1093/nar/gkj022 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Bernice R. Packer, Meredith Yeager, Laura Burdett, Robert Welch, Michael Beerman, Liqun Qi, Hugues Sicotte, Brian Staats, Mekhala Acharya, Andrew Crenshaw, Andrew Eckert, Vinita Puri, Daniela S. Gerhard, and Stephen J. Chanock
SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes
Nucl. Acids Res. 2006 34: D617-D621; doi:10.1093/nar/gkj151 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Yuan Huang, Yuh-Shyong Yang, and Tzu-Hao Wang
dbPTM: an information repository of protein post-translational modification
Nucl. Acids Res. 2006 34: D622-D627; doi:10.1093/nar/gkj083 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Osamu Ogasawara, Makiko Otsuji, Kouji Watanabe, Takayasu Iizuka, Takuro Tamura, Teruyoshi Hishiki, Shoko Kawamoto, and Kousaku Okubo
BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
Nucl. Acids Res. 2006 34: D628-D631; doi:10.1093/nar/gkj137 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Hideya Kawaji, Takeya Kasukawa, Shiro Fukuda, Shintaro Katayama, Chikatoshi Kai, Jun Kawai, Piero Carninci, and Yoshihide Hayashizaki
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis
Nucl. Acids Res. 2006 34: D632-D636; doi:10.1093/nar/gkj034 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jeffrey H. Christiansen, Yiya Yang, Shanmugasundaram Venkataraman, Lorna Richardson, Peter Stevenson, Nicholas Burton, Richard A. Baldock, and Duncan R. Davidson
EMAGE: a spatial database of gene expression patterns during mouse embryo development
Nucl. Acids Res. 2006 34: D637-D641; doi:10.1093/nar/gkj006 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Alex S. Nord, Patricia J. Chang, Bruce R. Conklin, Antony V. Cox, Courtney A. Harper, Geoffrey G. Hicks, Conrad C. Huang, Susan J. Johns, Michiko Kawamoto, Songyan Liu, Elaine C. Meng, John H. Morris, Janet Rossant, Patricia Ruiz, William C. Skarnes, Philippe Soriano, William L. Stanford, Doug Stryke, Harald von Melchner, Wolfgang Wurst, Ken-ichi Yamamura, Stephen G. Young, Patricia C. Babbitt, and Thomas E. Ferrin
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse
Nucl. Acids Res. 2006 34: D642-D648; doi:10.1093/nar/gkj097 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Thomas McLaughlin, Jennifer A. Siepen, Julian Selley, Jennifer A. Lynch, King Wai Lau, Hujun Yin, Simon J. Gaskell, and Simon J. Hubbard
PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns
Nucl. Acids Res. 2006 34: D649-D654; doi:10.1093/nar/gkj066 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Frank Desiere, Eric W. Deutsch, Nichole L. King, Alexey I. Nesvizhskii, Parag Mallick, Jimmy Eng, Sharon Chen, James Eddes, Sandra N. Loevenich, and Ruedi Aebersold
The PeptideAtlas project
Nucl. Acids Res. 2006 34: D655-D658; doi:10.1093/nar/gkj040 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Philip Jones, Richard G. Côté, Lennart Martens, Antony F. Quinn, Chris F. Taylor, William Derache, Henning Hermjakob, and Rolf Apweiler
PRIDE: a public repository of protein and peptide identifications for the proteomics community
Nucl. Acids Res. 2006 34: D659-D663; doi:10.1093/nar/gkj138 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Xiaochen Bo, Shaoke Lou, Daochun Sun, Jing Yang, and Shengqi Wang
AOBase: a database for antisense oligonucleotides selection and design
Nucl. Acids Res. 2006 34: D664-D667; doi:10.1093/nar/gkj065 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

David S. Wishart, Craig Knox, An Chi Guo, Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, and Jennifer Woolsey
DrugBank: a comprehensive resource for in silico drug discovery and exploration
Nucl. Acids Res. 2006 34: D668-D672; doi:10.1093/nar/gkj067 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Yasushi Okuno, Jiyoon Yang, Kei Taneishi, Hiroaki Yabuuchi, and Gozoh Tsujimoto
GLIDA: GPCR-ligand database for chemical genomic drug discovery
Nucl. Acids Res. 2006 34: D673-D677; doi:10.1093/nar/gkj028 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Mathias Dunkel, Melanie Fullbeck, Stefanie Neumann, and Robert Preissner
SuperNatural: a searchable database of available natural compounds
Nucl. Acids Res. 2006 34: D678-D683; doi:10.1093/nar/gkj132 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Filip Pattyn, Piet Robbrecht, Anne De Paepe, Frank Speleman, and Jo Vandesompele
RTPrimerDB: the real-time PCR primer and probe database, major update 2006
Nucl. Acids Res. 2006 34: D684-D688; doi:10.1093/nar/gkj155 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Nicolas Le Novère, Benjamin Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert Sauro, Maria Schilstra, Bruce Shapiro, Jacky L. Snoep, and Michael Hucka
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
Nucl. Acids Res. 2006 34: D689-D691; doi:10.1093/nar/gkj092 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Liying Cui, Narayanan Veeraraghavan, Alexander Richter, Kerr Wall, Robert K. Jansen, Jim Leebens-Mack, Izabela Makalowska, and Claude W. dePamphilis
ChloroplastDB: the Chloroplast Genome Database
Nucl. Acids Res. 2006 34: D692-D696; doi:10.1093/nar/gkj055 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Emmet A. O'Brien, Yue Zhang, LiuSong Yang, Eric Wang, Veronique Marie, B. Franz Lang, and Gertraud Burger
GOBASE—a database of organelle and bacterial genome information
Nucl. Acids Res. 2006 34: D697-D699; doi:10.1093/nar/gkj098 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jochen Kohl, Ingo Paulsen, Thomas Laubach, Achim Radtke, and Arndt von Haeseler
HvrBase++: a phylogenetic database for primate species
Nucl. Acids Res. 2006 34: D700-D704; doi:10.1093/nar/gkj030 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

H. Prokisch, C. Andreoli, U. Ahting, K. Heiss, A. Ruepp, C. Scharfe, and T. Meitinger
MitoP2: the mitochondrial proteome database—now including mouse data
Nucl. Acids Res. 2006 34: D705-D711; doi:10.1093/nar/gkj127 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Davina K. Button, Kevan M. A. Gartland, Leslie D. Ball, Louis Natanson, Jill S. Gartland, and Gary D. Lyon
DRASTIC—INSIGHTS: querying information in a plant gene expression database
Nucl. Acids Res. 2006 34: D712-D716; doi:10.1093/nar/gkj136 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Pankaj Jaiswal, Junjian Ni, Immanuel Yap, Doreen Ware, William Spooner, Ken Youens-Clark, Liya Ren, Chengzhi Liang, Wei Zhao, Kiran Ratnapu, Benjamin Faga, Payan Canaran, Molly Fogleman, Claire Hebbard, Shuly Avraham, Steven Schmidt, Terry M. Casstevens, Edward S. Buckler, Lincoln Stein, and Susan McCouch
Gramene: a bird's eye view of cereal genomes
Nucl. Acids Res. 2006 34: D717-D723; doi:10.1093/nar/gkj154 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Stefanie Hartmann, Dihui Lu, Jason Phillips, and Todd J. Vision
Phytome: a platform for plant comparative genomics
Nucl. Acids Res. 2006 34: D724-D730; doi:10.1093/nar/gkj045 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Mayumi Nakano, Kan Nobuta, Kalyan Vemaraju, Shivakundan Singh Tej, Jeremy W. Skogen, and Blake C. Meyers
Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA
Nucl. Acids Res. 2006 34: D731-D735; doi:10.1093/nar/gkj077 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

G. Droc, M. Ruiz, P. Larmande, A. Pereira, P. Piffanelli, J. B. Morel, A. Dievart, B. Courtois, E. Guiderdoni, and C. Périn
OryGenesDB: a database for rice reverse genetics
Nucl. Acids Res. 2006 34: D736-D740; doi:10.1093/nar/gkj012 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A. Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, and Takuji Sasaki
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
Nucl. Acids Res. 2006 34: D741-D744; doi:10.1093/nar/gkj094 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jianwei Zhang, Caishun Li, Changyin Wu, Lizhong Xiong, Guoxing Chen, Qifa Zhang, and Shiping Wang
RMD: a rice mutant database for functional analysis of the rice genome
Nucl. Acids Res. 2006 34: D745-D748; doi:10.1093/nar/gkj016 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material]   OPEN ACCESS ARTICLE  

Max Ingman and Ulf Gyllensten
mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
Nucl. Acids Res. 2006 34: D749-D751; doi:10.1093/nar/gkj010 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Wei Zhao, Payan Canaran, Rebecca Jurkuta, Theresa Fulton, Jeffrey Glaubitz, Edward Buckler, John Doebley, Brandon Gaut, Major Goodman, Jim Holland, Stephen Kresovich, Michael McMullen, Lincoln Stein, and Doreen Ware
Panzea: a database and resource for molecular and functional diversity in the maize genome
Nucl. Acids Res. 2006 34: D752-D757; doi:10.1093/nar/gkj011 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Jeffry L. Shultz, Deepak Kurunam, Kay Shopinski, M. Javed Iqbal, Samreen Kazi, Kimberley Zobrist, Rabia Bashir, Satsuki Yaegashi, Nagajyothi Lavu, Ahmed J. Afzal, Charles R. Yesudas, M. Abdelmajid Kassem, Chengcang Wu, Hong Bin Zhang, Christopher D. Town, Khalid Meksem, and David A. Lightfoot
The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max
Nucl. Acids Res. 2006 34: D758-D765; doi:10.1093/nar/gkj050 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Zhangjun Fei, Xuemei Tang, Rob Alba, and James Giovannoni
Tomato Expression Database (TED): a suite of data presentation and analysis tools
Nucl. Acids Res. 2006 34: D766-D770; doi:10.1093/nar/gkj110 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Agnes P. Chan, Geo Pertea, Foo Cheung, Dan Lee, Li Zheng, Cathy Whitelaw, Ana C. Pontaroli, Phillip SanMiguel, Yinan Yuan, Jeffrey Bennetzen, William Brad Barbazuk, John Quackenbush, and Pablo D. Rabinowicz
The TIGR Maize Database
Nucl. Acids Res. 2006 34: D771-D776; doi:10.1093/nar/gkj072 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Avner Schlessinger, Yanay Ofran, Guy Yachdav, and Burkhard Rost
Epitome: database of structure-inferred antigenic epitopes
Nucl. Acids Res. 2006 34: D777-D780; doi:10.1093/nar/gkj053 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE  

Véronique Giudicelli, Patrice Duroux, Chantal Ginestoux, Géraldine Folch, Joumana Jabado-Michaloud, Denys Chaume, and Marie-Paule Lefranc
IMGT/LIGM-DB, the IMGT® comprehensive database of immunoglobulin and T cell receptor nucleotide sequences
Nucl. Acids Res. 2006 34: D781-D784; doi:10.1093/nar/gkj088 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]   OPEN ACCESS ARTICLE